MLOC_19593 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.57646.866737.019957.38807
LEAShoots from the seedlings (10 cm shoot stage)21.956129.948528.742424.0083
INF1Young developing inflorescences (5mm)12.478412.899312.927911.3618
INF2Developing inflorescences (1-1.5 cm)26.566112.931815.772620.764
ROORoots from the seedlings (10 cm shoot stage)27.410628.679321.546336.595
NODDeveloping tillers at six leaf stage, 3rd internode25.191633.617561.8314130.736
CAR5Developing grain, bracts removed (5 DPA)4.54682.26951.685232.83412
CAR15Developing grain, bracts removed (15 DPA)2.321832.552992.28295.88112



CDS Structure of MLOC_19593






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19593.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358805NoneNoneNoneNone
MLOC_19593.3CUST_1858_PI427708080AvailableAvailablecontig_158556 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48570.1 -3 0.0 549 320/485 (66%) 13107.m05204 protein expressed protein
TAIR PP10 AT3G47500.1 -3 1e-59 209 168/472 (36%) | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504276-17505964 REVERSE LENGTH=448