MLOC_19561 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains85.586254.241360.845267.2284
LEAShoots from the seedlings (10 cm shoot stage)35.615542.81938.495836.7595
INF1Young developing inflorescences (5mm)22.337123.082824.36221.6779
INF2Developing inflorescences (1-1.5 cm)18.239416.768618.458221.0515
ROORoots from the seedlings (10 cm shoot stage)66.98846.106945.811865.3439
NODDeveloping tillers at six leaf stage, 3rd internode21.600621.686916.144172.2754
CAR5Developing grain, bracts removed (5 DPA)22.428422.428923.520425.0161
CAR15Developing grain, bracts removed (15 DPA)11.143211.45411.904428.7633



CDS Structure of MLOC_19561






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19561.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19561.1CUST_11617_PI427708083AvailableAvailablecontig_1585384 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g17190.1 -3 6e-64 203 119/124 (96%) 13101.m01929 protein OsCam3 - Calmodulin, expressed
TAIR PP10 AT2G27030.3 -3 1e-66 211 121/130 (93%) | Symbols: CAM5 | calmodulin 5 | chr2:11532069-11534176 FORWARD LENGTH=181