MLOC_1956 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 6.31084 | 7.15434 | 7.15674 | 8.11862 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 10.278 | 18.1338 | 17.394 | 14.5887 |
| INF1 | Young developing inflorescences (5mm) | 5.15038 | 4.28521 | 3.01456 | 3.98864 |
| INF2 | Developing inflorescences (1-1.5 cm) | 3.53818 | 2.9556 | 2.44663 | 3.79572 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 8.58713 | 10.7549 | 10.9649 | 14.9758 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 3.59454 | 4.20723 | 5.09035 | 16.0935 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 3.44446 | 3.30983 | 3.11829 | 3.79812 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 9.27943 | 15.4468 | 12.2959 | 33.9928 |
CDS Structure of MLOC_1956
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_1956.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g43040.1 |
-3 |
7e-167 |
476 |
238/280 (85%) |
13105.m04530 protein tetratricopeptide repeat domain containing protein, expressed |
| TAIR PP10 |
AT5G48850.1 |
-3 |
4e-116 |
346 |
176/284 (62%) |
| Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19805576-19807699 REVERSE LENGTH=306 |
