MLOC_1955 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9698730.4551530.2462670.511545
LEAShoots from the seedlings (10 cm shoot stage)0.1425570.67894800.344532
INF1Young developing inflorescences (5mm)0.2164570.577630.1840260.282123
INF2Developing inflorescences (1-1.5 cm)2.127390.6327370.682351.2509
ROORoots from the seedlings (10 cm shoot stage)0.3935810.2172580.4981350.295901
NODDeveloping tillers at six leaf stage, 3rd internode0.12729100.1311730.107953
CAR5Developing grain, bracts removed (5 DPA)0.4430840.6625060.2637850.450407
CAR15Developing grain, bracts removed (15 DPA)5630.175841.695907.2313371.5



CDS Structure of MLOC_1955






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1955.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1955.1CUST_2831_PI427708083AvailableAvailablecontig_11743 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g41438.1 +2 3e-32 123 87/138 (63%) 13103.m04460 protein serpin domain containing protein, putative, expressed
TAIR PP10 AT1G47710.1 +2 5e-18 82 52/141 (37%) Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391