MLOC_19548 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains149.974197.738204.959173.227
LEAShoots from the seedlings (10 cm shoot stage)138.48290.5979.470786.1894
INF1Young developing inflorescences (5mm)223.466227.329224.624173.164
INF2Developing inflorescences (1-1.5 cm)181.05184.55203.039189.448
ROORoots from the seedlings (10 cm shoot stage)73.3498138.194144.223147.088
NODDeveloping tillers at six leaf stage, 3rd internode139.213109.33138.863396.312
CAR5Developing grain, bracts removed (5 DPA)227.733230.235226.258204.187
CAR15Developing grain, bracts removed (15 DPA)92.146788.058184.74186.434



CDS Structure of MLOC_19548






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19548.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248805.1NoneNoneNoneNone
MLOC_19548.2CUST_1855_PI427708080AvailableAvailablecontig_158534 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g09940.1 -2 0.0 737 359/394 (91%) 13108.m01050 protein GTP-binding protein, putative, expressed
TAIR PP10 AT1G30580.1 -2 0.0 668 325/394 (82%) GTP binding | chr1:10831953-10835454 REVERSE LENGTH=394