MLOC_19546 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4371680.3564860.3391930.478625
LEAShoots from the seedlings (10 cm shoot stage)0.5201970.04977450.3047310.258101
INF1Young developing inflorescences (5mm)0.1047030.1754390.1419850.1556
INF2Developing inflorescences (1-1.5 cm)0.7696891.059551.18681.40449
ROORoots from the seedlings (10 cm shoot stage)1.200390.3702350.4365510.717216
NODDeveloping tillers at six leaf stage, 3rd internode1.925872.831260.04861697.82455
CAR5Developing grain, bracts removed (5 DPA)0.07743520.09827310.128540.137482
CAR15Developing grain, bracts removed (15 DPA)0.08183360.02362590.3027730.354994



CDS Structure of MLOC_19546






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19546.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376238NoneNoneNoneNone
MLOC_19546.1CUST_1854_PI427708080AvailableAvailablecontig_158534 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g68540.1 +3 2e-109 326 178/183 (97%) 13101.m07468 protein rho GDP-dissociation inhibitor 1, putative, expressed
TAIR PP10 AT3G07880.1 +3 5e-68 219 114/175 (65%) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240