- Predicted Gene MLOC_19546
MLOC_19546 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_19546_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_19546_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.437168 | 0.356486 | 0.339193 | 0.478625 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.520197 | 0.0497745 | 0.304731 | 0.258101 |
INF1 | Young developing inflorescences (5mm) | 0.104703 | 0.175439 | 0.141985 | 0.1556 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.769689 | 1.05955 | 1.1868 | 1.40449 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.20039 | 0.370235 | 0.436551 | 0.717216 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.92587 | 2.83126 | 0.0486169 | 7.82455 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.0774352 | 0.0982731 | 0.12854 | 0.137482 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0818336 | 0.0236259 | 0.302773 | 0.354994 |
CDS Structure of MLOC_19546
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_19546.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g68540.1 |
+3 |
2e-109 |
326 |
178/183 (97%) |
13101.m07468 protein rho GDP-dissociation inhibitor 1, putative, expressed |
TAIR PP10 |
AT3G07880.1 |
+3 |
5e-68 |
219 |
114/175 (65%) |
| Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240 |