MLOC_19519 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.51430.076526.296422.5996
LEAShoots from the seedlings (10 cm shoot stage)27.989636.055537.30127.4223
INF1Young developing inflorescences (5mm)33.045531.998735.765426.2336
INF2Developing inflorescences (1-1.5 cm)44.839341.407339.094342.9473
ROORoots from the seedlings (10 cm shoot stage)15.710324.764223.37226.7825
NODDeveloping tillers at six leaf stage, 3rd internode21.58326.001836.980484.7218
CAR5Developing grain, bracts removed (5 DPA)31.504629.131732.238927.4234
CAR15Developing grain, bracts removed (15 DPA)67.354560.889461.7094127.131



CDS Structure of MLOC_19519






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19519.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19519.2CUST_11616_PI427708083AvailableAvailablecontig_158520 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47820.2 +3 0.0 621 300/363 (83%) 13107.m05108 protein acyl-CoA dehydrogenase family member 10, putative, expressed
TAIR PP10 AT3G06810.1 +3 3e-149 456 218/349 (62%) | Symbols: IBR3 | acyl-CoA dehydrogenase-related | chr3:2146534-2150654 FORWARD LENGTH=824