MLOC_19482 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.663870.8747840.7353131.15085
LEAShoots from the seedlings (10 cm shoot stage)0.0612844000.0543244
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.03151210.2331740.1524
ROORoots from the seedlings (10 cm shoot stage)2.70094.028771.706884.93395
NODDeveloping tillers at six leaf stage, 3rd internode0.0248860.039114200.139784
CAR5Developing grain, bracts removed (5 DPA)0.03832360.3282130.5734510.445213
CAR15Developing grain, bracts removed (15 DPA)1.50130.6644950.4233962.54217



CDS Structure of MLOC_19482






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19482.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367780NoneNoneNoneNone
AK372106NoneNoneNoneNone
MLOC_19482.1CUST_1850_PI427708080AvailableAvailablecontig_1585072 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46480.2 -3 2e-52 175 113/174 (65%) 13105.m04962 protein late embryogenesis abundant protein, group 3, putative, expressed
TAIR PP10 AT3G15670.1 -3 9e-32 120 87/213 (41%) Late embryogenesis abundant protein (LEA) family protein | chr3:5310141-5310901 REVERSE LENGTH=225