MLOC_19368 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.591766.078861.00963.0105
LEAShoots from the seedlings (10 cm shoot stage)58.461365.571556.142857.4974
INF1Young developing inflorescences (5mm)76.864876.002876.639468.8713
INF2Developing inflorescences (1-1.5 cm)77.925295.215782.895398.7471
ROORoots from the seedlings (10 cm shoot stage)27.181859.240550.457975.3897
NODDeveloping tillers at six leaf stage, 3rd internode36.231440.308539.2595144.249
CAR5Developing grain, bracts removed (5 DPA)70.963268.593771.543771.8964
CAR15Developing grain, bracts removed (15 DPA)61.560.58158.2828145.041



CDS Structure of MLOC_19368






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19368.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361145NoneNoneNoneNone
MLOC_19368.7CUST_1843_PI427708080AvailableAvailablecontig_158466 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g10620.1 +2 0.0 1352 702/760 (92%) 13106.m01149 protein transcription elongation factor SPT5 homolog 1, putative, expressed
TAIR PP10 AT4G08350.1 +2 0.0 1181 634/937 (68%) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041