MLOC_19301 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains36.518334.633532.719432.7847
LEAShoots from the seedlings (10 cm shoot stage)24.886329.898635.299124.5562
INF1Young developing inflorescences (5mm)19.621120.741321.239815.9597
INF2Developing inflorescences (1-1.5 cm)19.514418.342918.333519.6688
ROORoots from the seedlings (10 cm shoot stage)46.24942.872840.071249.37
NODDeveloping tillers at six leaf stage, 3rd internode28.854826.331822.475583.7403
CAR5Developing grain, bracts removed (5 DPA)25.598329.599529.064626.5779
CAR15Developing grain, bracts removed (15 DPA)11.459811.302712.015524.458



CDS Structure of MLOC_19301






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19301.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252286.1NoneNoneNoneNone
MLOC_19301.1CUST_17962_PI427708080AvailableAvailablecontig_158435 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08480.1 -3 2e-179 510 279/315 (89%) 13102.m00981 protein ubiquitin fusion degradation protein, putative, expressed
TAIR PP10 AT2G21270.2 -3 2e-141 413 224/322 (70%) | Symbols: UFD1 | ubiquitin fusion degradation 1 | chr2:9108126-9110012 FORWARD LENGTH=319