MLOC_19214 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2123620.2425360.3253990.26339
LEAShoots from the seedlings (10 cm shoot stage)0.6417431.047190.6159530.65511
INF1Young developing inflorescences (5mm)0.8405981.517411.539481.01252
INF2Developing inflorescences (1-1.5 cm)1.455361.338331.783821.57315
ROORoots from the seedlings (10 cm shoot stage)0.07117770.1496010.1222510.172103
NODDeveloping tillers at six leaf stage, 3rd internode0.1660060.3682491.746441.84523
CAR5Developing grain, bracts removed (5 DPA)0.2395270.5600140.5041860.430408
CAR15Developing grain, bracts removed (15 DPA)0.4868970.3878940.166590.884775



CDS Structure of MLOC_19214






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19214.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19214.2CUST_2787_PI427708083AvailableAvailablecontig_1583937 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g44890.1 +1 4e-52 177 116/176 (66%) 13106.m04718 protein villin protein, putative, expressed
TAIR PP10 AT4G30160.2 +1 2e-32 124 84/153 (55%) | Symbols: VLN4 | villin 4 | chr4:14754528-14759511 FORWARD LENGTH=983