MLOC_19195 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains102.667154146.248123.367
LEAShoots from the seedlings (10 cm shoot stage)106.37258.187361.790361.2723
INF1Young developing inflorescences (5mm)91.798288.125681.499965.3147
INF2Developing inflorescences (1-1.5 cm)57.714968.941269.223464.0283
ROORoots from the seedlings (10 cm shoot stage)61.1108113.01997.5404110.171
NODDeveloping tillers at six leaf stage, 3rd internode141.6106.64258.8659309.847
CAR5Developing grain, bracts removed (5 DPA)101.002103.403103.67289.2881
CAR15Developing grain, bracts removed (15 DPA)24.649621.375220.840845.4719



CDS Structure of MLOC_19195






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19195.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367922NoneNoneNoneNone
MLOC_19195.2CUST_17960_PI427708080AvailableAvailablecontig_1583622 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g10150.1 -2 0.0 1538 845/889 (95%) 13107.m01027 protein coatomer subunit gamma-2, putative, expressed
TAIR PP10 AT4G34450.1 -2 0.0 1316 707/870 (81%) coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD LENGTH=886