MLOC_19172 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6645190.7476080.9844960.777737
LEAShoots from the seedlings (10 cm shoot stage)0.7030880.5345690.6633120.555077
INF1Young developing inflorescences (5mm)0.3296220.8998590.7406640.536
INF2Developing inflorescences (1-1.5 cm)0.5884090.7262840.400120.67754
ROORoots from the seedlings (10 cm shoot stage)1.395561.429141.670371.75422
NODDeveloping tillers at six leaf stage, 3rd internode0.353640.3987020.261251.31843
CAR5Developing grain, bracts removed (5 DPA)0.688870.7339950.6672660.687807
CAR15Developing grain, bracts removed (15 DPA)0.4695870.5206250.2802261.03395



CDS Structure of MLOC_19172






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19172.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19172.2CUST_2782_PI427708083AvailableAvailablecontig_158380 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g36700.1 -3 3e-161 483 241/289 (83%) 13106.m03797 protein T-complex protein, putative, expressed
TAIR PP10 AT1G24510.2 -3 2e-155 464 230/289 (80%) TCP-1/cpn60 chaperonin family protein | chr1:8685504-8687660 REVERSE LENGTH=459