- Predicted Gene MLOC_19165
MLOC_19165 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_19165_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_19165_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 6.70116 | 4.21343 | 4.22816 | 5.02886 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 3.31948 | 1.97179 | 4.01589 | 2.88533 |
INF1 | Young developing inflorescences (5mm) | 8.32908 | 9.64931 | 10.5595 | 8.13281 |
INF2 | Developing inflorescences (1-1.5 cm) | 7.15616 | 7.51695 | 8.51643 | 8.47797 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.87952 | 4.05887 | 3.59881 | 5.00889 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.413541 | 0.859628 | 1.83309 | 3.44809 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.61489 | 6.05823 | 6.47743 | 5.77305 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.266 | 1.94633 | 1.58962 | 4.66168 |
CDS Structure of MLOC_19165
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_19165.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g07080.1 |
+3 |
4e-95 |
307 |
138/145 (95%) |
13106.m00735 protein pre-mRNA-processing-splicing factor 8, putative, expressed |
TAIR PP10 |
AT1G80070.1 |
+3 |
3e-82 |
274 |
120/145 (83%) |
| Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359 |