MLOC_19165 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.701164.213434.228165.02886
LEAShoots from the seedlings (10 cm shoot stage)3.319481.971794.015892.88533
INF1Young developing inflorescences (5mm)8.329089.6493110.55958.13281
INF2Developing inflorescences (1-1.5 cm)7.156167.516958.516438.47797
ROORoots from the seedlings (10 cm shoot stage)2.879524.058873.598815.00889
NODDeveloping tillers at six leaf stage, 3rd internode0.4135410.8596281.833093.44809
CAR5Developing grain, bracts removed (5 DPA)4.614896.058236.477435.77305
CAR15Developing grain, bracts removed (15 DPA)2.2661.946331.589624.66168



CDS Structure of MLOC_19165






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19165.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19165.1CUST_2779_PI427708083AvailableAvailablecontig_1583759 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g07080.1 +3 4e-95 307 138/145 (95%) 13106.m00735 protein pre-mRNA-processing-splicing factor 8, putative, expressed
TAIR PP10 AT1G80070.1 +3 3e-82 274 120/145 (83%) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359