MLOC_19160 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.073863.355174.875884.24464
LEAShoots from the seedlings (10 cm shoot stage)0.6247240.6667650.1955980.406013
INF1Young developing inflorescences (5mm)0.6651320.8287281.28330.746553
INF2Developing inflorescences (1-1.5 cm)2.477582.404043.494942.81709
ROORoots from the seedlings (10 cm shoot stage)1.187911.049610.3766631.19189
NODDeveloping tillers at six leaf stage, 3rd internode0.2006150.18752700.714916
CAR5Developing grain, bracts removed (5 DPA)393.736435.96338.13361.731
CAR15Developing grain, bracts removed (15 DPA)76.759875.641767.7497162.218



CDS Structure of MLOC_19160






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19160.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19160.1CUST_9762_PI427708080AvailableAvailablecontig_1583732 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g03810.1 -3 1e-16 74 33/61 (54%) 13103.m00380 protein DEF8 - Defensin and Defensin-like DEFL family, expressed
TAIR PP10 AT2G02120.1 -3 2e-15 69 29/48 (60%) | Symbols: PDF2.1, LCR70 | Scorpion toxin-like knottin superfamily protein | chr2:538319-538842 FORWARD LENGTH=77