MLOC_19100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.073067.029785.044646.73813
LEAShoots from the seedlings (10 cm shoot stage)5.055794.007444.500613.89573
INF1Young developing inflorescences (5mm)11.13511.212712.45679.94242
INF2Developing inflorescences (1-1.5 cm)11.95413.644612.673314.3903
ROORoots from the seedlings (10 cm shoot stage)3.641056.532615.20367.49931
NODDeveloping tillers at six leaf stage, 3rd internode1.69272.74674.371439.66451
CAR5Developing grain, bracts removed (5 DPA)6.783218.343577.350567.60002
CAR15Developing grain, bracts removed (15 DPA)3.285443.081652.826587.43117



CDS Structure of MLOC_19100






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19100.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249159.1CUST_23243_PI427708080NoneNoneNone
MLOC_19100.2CUST_17958_PI427708080AvailableAvailablecontig_117001 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52750.2 -3 1e-179 516 247/303 (82%) 13103.m05753 protein cyclin, putative, expressed
TAIR PP10 AT5G27620.1 -3 3e-113 345 166/301 (55%) | Symbols: CYCH;1 | cyclin H;1 | chr5:9771762-9774684 FORWARD LENGTH=336