MLOC_19017 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.031527.311967.012557.41062
LEAShoots from the seedlings (10 cm shoot stage)8.278318.064916.53797.42021
INF1Young developing inflorescences (5mm)12.354912.87513.545511.2269
INF2Developing inflorescences (1-1.5 cm)14.115315.239714.164716.5147
ROORoots from the seedlings (10 cm shoot stage)3.889846.852035.670119.38877
NODDeveloping tillers at six leaf stage, 3rd internode5.594846.248315.6563925.3315
CAR5Developing grain, bracts removed (5 DPA)10.728310.894612.030411.4559
CAR15Developing grain, bracts removed (15 DPA)7.112676.400366.4476815.2703



CDS Structure of MLOC_19017






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19017.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19017.1CUST_9742_PI427708080AvailableAvailablecontig_1583084 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g42040.1 +3 4e-117 385 266/305 (87%) 13102.m04647 protein MIF4G domain containing protein, putative, expressed
TAIR PP10 AT2G39260.1 +3 2e-48 186 159/310 (51%) binding;RNA binding | chr2:16392288-16399588 REVERSE LENGTH=1181