MLOC_18966 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.574217.224614.93117.5691
LEAShoots from the seedlings (10 cm shoot stage)23.573913.209613.496715.3207
INF1Young developing inflorescences (5mm)18.229314.489612.554713.1634
INF2Developing inflorescences (1-1.5 cm)9.6373810.22789.6326711.29
ROORoots from the seedlings (10 cm shoot stage)5.458157.371927.936089.59655
NODDeveloping tillers at six leaf stage, 3rd internode5.434096.001359.6346525.5556
CAR5Developing grain, bracts removed (5 DPA)12.308412.652814.508613.5737
CAR15Developing grain, bracts removed (15 DPA)5.234654.657914.9421811.4978



CDS Structure of MLOC_18966






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18966.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367171NoneNoneNoneNone
MLOC_18966.1CUST_1817_PI427708080AvailableAvailablecontig_1582892 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g04990.1 -2 0.0 774 493/648 (76%) 13109.m00438 protein cytoskeletal protein, putative, expressed
TAIR PP10 AT1G62390.1 -2 0.0 541 300/467 (64%) | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr1:23084632-23086887 REVERSE LENGTH=751