MLOC_18964 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.636814.197516.123714.6384
LEAShoots from the seedlings (10 cm shoot stage)11.26382.339593.604534.8305
INF1Young developing inflorescences (5mm)46.863446.262841.723533.0155
INF2Developing inflorescences (1-1.5 cm)30.223445.14963.785639.6877
ROORoots from the seedlings (10 cm shoot stage)14.145320.462423.182517.4777
NODDeveloping tillers at six leaf stage, 3rd internode2.210863.005384.291738.12305
CAR5Developing grain, bracts removed (5 DPA)24.745723.632519.025517.0701
CAR15Developing grain, bracts removed (15 DPA)2.882111.439742.888674.82243



CDS Structure of MLOC_18964






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18964.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18964.2CUST_11600_PI427708083AvailableAvailablecontig_1582885 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39410.1 +1 2e-17 78 37/37 (100%) 13110.m03607 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT1G07660.2 +1 5e-18 78 37/37 (100%) Histone superfamily protein | chr1:2369212-2369523 FORWARD LENGTH=86