MLOC_18933 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.908454.695684.926944.94963
LEAShoots from the seedlings (10 cm shoot stage)7.939127.3114810.80256.95288
INF1Young developing inflorescences (5mm)7.093379.573678.760447.42787
INF2Developing inflorescences (1-1.5 cm)11.671810.42149.9957512.0941
ROORoots from the seedlings (10 cm shoot stage)8.615788.232755.68128.79104
NODDeveloping tillers at six leaf stage, 3rd internode6.609869.6811511.933629.8592
CAR5Developing grain, bracts removed (5 DPA)6.656447.210556.499296.82813
CAR15Developing grain, bracts removed (15 DPA)4.076933.528314.281659.512



CDS Structure of MLOC_18933






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18933.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18933.1CUST_2745_PI427708083AvailableAvailablecontig_158271 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g43490.2 +3 3e-171 499 308/416 (74%) 13105.m04581 protein OsFBX169 - F-box domain containing protein, expressed
TAIR PP10 AT5G46170.1 +3 6e-125 379 233/385 (61%) F-box family protein | chr5:18715638-18716825 REVERSE LENGTH=395