MLOC_1886 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.085954.113024.774083.28479
LEAShoots from the seedlings (10 cm shoot stage)4.263551.406962.685632.32178
INF1Young developing inflorescences (5mm)6.446567.615729.249725.62687
INF2Developing inflorescences (1-1.5 cm)11.025512.189111.425811.6729
ROORoots from the seedlings (10 cm shoot stage)2.125974.133243.368474.05873
NODDeveloping tillers at six leaf stage, 3rd internode9.467917.3085.7483920.9188
CAR5Developing grain, bracts removed (5 DPA)5.625277.14725.512915.59861
CAR15Developing grain, bracts removed (15 DPA)3.142842.361243.100015.97555



CDS Structure of MLOC_1886






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1886.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1886.3CUST_2729_PI427708083AvailableAvailablecontig_116845 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g63710.2 +3 2e-67 219 112/148 (76%) 13103.m07066 protein GTPase-activating protein, putative, expressed
TAIR PP10 AT4G17890.2 +3 3e-54 184 87/123 (71%) | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937121-9938988 FORWARD LENGTH=384