MLOC_18827 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.319519.38918.034725.7643
LEAShoots from the seedlings (10 cm shoot stage)13.4889.1614410.182712.325
INF1Young developing inflorescences (5mm)42.281543.006847.045447.7187
INF2Developing inflorescences (1-1.5 cm)42.134239.950339.476958.9339
ROORoots from the seedlings (10 cm shoot stage)12.032517.942319.66635.4054
NODDeveloping tillers at six leaf stage, 3rd internode2.646953.287948.3943821.1316
CAR5Developing grain, bracts removed (5 DPA)29.459129.162629.234740.226
CAR15Developing grain, bracts removed (15 DPA)20.210419.940417.479257.3859



CDS Structure of MLOC_18827






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18827.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18827.1CUST_9722_PI427708080AvailableAvailablecontig_158214 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48422.1 +2 3e-125 383 258/381 (68%) 13105.m05151 protein 60S ribosomal protein-related, putative, expressed
TAIR PP10 AT3G58660.1 +2 2e-49 180 132/339 (39%) Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446