MLOC_18790 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.912416.057315.755718.5741
LEAShoots from the seedlings (10 cm shoot stage)11.15187.284318.937618.30996
INF1Young developing inflorescences (5mm)24.399227.677827.068325.2383
INF2Developing inflorescences (1-1.5 cm)16.634419.823516.700721.7003
ROORoots from the seedlings (10 cm shoot stage)15.685411.153510.445915.6913
NODDeveloping tillers at six leaf stage, 3rd internode1.301752.924615.7336112.057
CAR5Developing grain, bracts removed (5 DPA)11.127113.155912.632513.4912
CAR15Developing grain, bracts removed (15 DPA)1.932682.388892.129595.65542



CDS Structure of MLOC_18790






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18790.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355376NoneNoneNoneNone
MLOC_18790.1CUST_1807_PI427708080AvailableAvailablecontig_1582012 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g33480.1 +3 9e-115 350 236/371 (64%) 13109.m03327 protein DAG protein, chloroplast precursor, putative, expressed
TAIR PP10 AT3G15000.1 +3 2e-81 263 187/337 (55%) cobalt ion binding | chr3:5050321-5052121 FORWARD LENGTH=395