MLOC_18736 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains88.878485.723789.348378.7924
LEAShoots from the seedlings (10 cm shoot stage)65.032724.592628.494432.5526
INF1Young developing inflorescences (5mm)116.495121.488121.57588.4434
INF2Developing inflorescences (1-1.5 cm)84.738106.508100.85593.2734
ROORoots from the seedlings (10 cm shoot stage)69.418478.102174.999779.8357
NODDeveloping tillers at six leaf stage, 3rd internode149.392138.60194.6113388.383
CAR5Developing grain, bracts removed (5 DPA)81.788179.36977.467367.0315
CAR15Developing grain, bracts removed (15 DPA)9.897466.6346911.532717.715



CDS Structure of MLOC_18736






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18736.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364889NoneNoneNoneNone
MLOC_18736.1CUST_1803_PI427708080AvailableAvailablecontig_1581807 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g37160.1 +2 0.0 1145 589/622 (95%) 13106.m03848 protein transmembrane 9 superfamily member, putative, expressed
TAIR PP10 AT3G13772.1 +2 0.0 954 483/617 (78%) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641