MLOC_18720 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.021620.418917.242215.7934
LEAShoots from the seedlings (10 cm shoot stage)10.350311.40786.191937.636
INF1Young developing inflorescences (5mm)41.506840.961236.633930.7817
INF2Developing inflorescences (1-1.5 cm)42.053436.983632.607438.625
ROORoots from the seedlings (10 cm shoot stage)5.4326613.234310.268513.524
NODDeveloping tillers at six leaf stage, 3rd internode1.754951.895285.746877.7355
CAR5Developing grain, bracts removed (5 DPA)18.176718.577820.175117.0827
CAR15Developing grain, bracts removed (15 DPA)8.868858.341247.0016917.3469



CDS Structure of MLOC_18720






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18720.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18720.1CUST_2704_PI427708083AvailableAvailablecontig_1581732 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12160.1 +1 4e-145 442 231/284 (81%) 13106.m01321 protein AAA-type ATPase family protein, putative, expressed
TAIR PP10 AT1G50140.1 +1 2e-80 269 140/292 (48%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:18569921-18578663 REVERSE LENGTH=1003