MLOC_18718 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains487.227359.83364.911429.032
LEAShoots from the seedlings (10 cm shoot stage)220.304162.346231.544178.048
INF1Young developing inflorescences (5mm)62.789139.369735.830442.4663
INF2Developing inflorescences (1-1.5 cm)31.063325.675351.188740.4099
ROORoots from the seedlings (10 cm shoot stage)324.244213.283225.251286.925
NODDeveloping tillers at six leaf stage, 3rd internode145.271150.114247.377503.528
CAR5Developing grain, bracts removed (5 DPA)171.965148.936115.104158.397
CAR15Developing grain, bracts removed (15 DPA)36.847233.501731.685489.5874



CDS Structure of MLOC_18718






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18718.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364486NoneNoneNoneNone
MLOC_18718.1CUST_1802_PI427708080AvailableAvailablecontig_1581719 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g27360.1 +3 2e-132 381 182/217 (84%) 13101.m02844 protein glutathione S-transferase, putative, expressed
TAIR PP10 AT3G62760.1 +3 2e-68 217 104/208 (50%) | Symbols: ATGSTF13 | Glutathione S-transferase family protein | chr3:23217425-23218246 REVERSE LENGTH=219