MLOC_18650 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_18650






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18650.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249256.1NoneNoneNoneNone
MLOC_18650.1CUST_6927_PI427708080AvailableAvailablecontig_1581374 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43600.1 +2 3e-72 228 114/123 (93%) 13102.m04844 protein 50S ribosomal protein L19, chloroplast precursor, putative, expressed
TAIR PP10 AT4G17560.1 +2 5e-47 161 76/123 (62%) Ribosomal protein L19 family protein | chr4:9780343-9781752 FORWARD LENGTH=225