MLOC_18603 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.329978.369699.818046.4665
LEAShoots from the seedlings (10 cm shoot stage)4.784113.134723.094182.42177
INF1Young developing inflorescences (5mm)4.001255.346656.5122.99697
INF2Developing inflorescences (1-1.5 cm)4.293654.437284.77083.54054
ROORoots from the seedlings (10 cm shoot stage)4.862164.517567.217313.9254
NODDeveloping tillers at six leaf stage, 3rd internode10.16996.512495.4758815.3238
CAR5Developing grain, bracts removed (5 DPA)4.287463.476063.876792.58815
CAR15Developing grain, bracts removed (15 DPA)1.199741.029131.594772.04906



CDS Structure of MLOC_18603






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18603.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18603.1CUST_11582_PI427708083AvailableAvailablecontig_158118 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g05080.1 +1 2e-20 91 44/46 (96%) 13106.m00478 protein cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed
TAIR PP10 AT1G80230.1 +1 5e-11 62 34/54 (63%) Rubredoxin-like superfamily protein | chr1:30169784-30170999 REVERSE LENGTH=171