MLOC_18524 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.50112.64113.61413.3378
LEAShoots from the seedlings (10 cm shoot stage)12.176114.569314.229611.581
INF1Young developing inflorescences (5mm)21.254321.298822.71118.5252
INF2Developing inflorescences (1-1.5 cm)28.454221.510524.355626.8425
ROORoots from the seedlings (10 cm shoot stage)13.364614.37714.076116.9091
NODDeveloping tillers at six leaf stage, 3rd internode11.712912.921116.411544.8801
CAR5Developing grain, bracts removed (5 DPA)10.500211.333513.939611.5209
CAR15Developing grain, bracts removed (15 DPA)6.479346.135166.1911614.4935



CDS Structure of MLOC_18524






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18524.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353707NoneNoneNoneNone
MLOC_18524.1CUST_1786_PI427708080AvailableAvailablecontig_158089 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g15880.5 +3 0.0 984 503/583 (86%) 13103.m01870 protein coronatine-insensitive protein, putative, expressed
TAIR PP10 AT2G39940.1 +3 0.0 636 332/571 (58%) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592