MLOC_18499 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains142.785151.042130.51157.579
LEAShoots from the seedlings (10 cm shoot stage)241.60227.565250.477886.196
INF1Young developing inflorescences (5mm)61.145534.734225.297237.4391
INF2Developing inflorescences (1-1.5 cm)43.759332.934235.768245.5336
ROORoots from the seedlings (10 cm shoot stage)71.920972.400969.865585.9919
NODDeveloping tillers at six leaf stage, 3rd internode136.48112.0796.73671225.816
CAR5Developing grain, bracts removed (5 DPA)26.933430.697719.462828.5551
CAR15Developing grain, bracts removed (15 DPA)3.479731.313453.858027.28157



CDS Structure of MLOC_18499






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18499.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367663NoneNoneNoneNone
MLOC_18499.1CUST_1784_PI427708080AvailableAvailablecontig_1580799 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g48160.1 -1 8e-177 505 253/293 (86%) 13106.m05119 protein glycosyl hydrolases family 16, putative, expressed
TAIR PP10 AT4G25810.1 -1 3e-122 365 175/276 (63%) | Symbols: XTR6, XTH23 | xyloglucan endotransglycosylase 6 | chr4:13128694-13129715 FORWARD LENGTH=286