- Predicted Gene MLOC_18499
MLOC_18499 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 142.785 | 151.042 | 130.51 | 157.579 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 241.602 | 27.5652 | 50.4778 | 86.196 |
INF1 | Young developing inflorescences (5mm) | 61.1455 | 34.7342 | 25.2972 | 37.4391 |
INF2 | Developing inflorescences (1-1.5 cm) | 43.7593 | 32.9342 | 35.7682 | 45.5336 |
ROO | Roots from the seedlings (10 cm shoot stage) | 71.9209 | 72.4009 | 69.8655 | 85.9919 |
NOD | Developing tillers at six leaf stage, 3rd internode | 136.48 | 112.079 | 6.73671 | 225.816 |
CAR5 | Developing grain, bracts removed (5 DPA) | 26.9334 | 30.6977 | 19.4628 | 28.5551 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.47973 | 1.31345 | 3.85802 | 7.28157 |
CDS Structure of MLOC_18499
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_18499.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g48160.1 |
-1 |
8e-177 |
505 |
253/293 (86%) |
13106.m05119 protein glycosyl hydrolases family 16, putative, expressed |
TAIR PP10 |
AT4G25810.1 |
-1 |
3e-122 |
365 |
175/276 (63%) |
| Symbols: XTR6, XTH23 | xyloglucan endotransglycosylase 6 | chr4:13128694-13129715 FORWARD LENGTH=286 |