MLOC_18498 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.354611.409181.721141.6543
LEAShoots from the seedlings (10 cm shoot stage)1.882830.8749123.468031.41603
INF1Young developing inflorescences (5mm)7.940527.459716.760234.72286
INF2Developing inflorescences (1-1.5 cm)4.69996.265774.558484.49759
ROORoots from the seedlings (10 cm shoot stage)1.413383.15282.20682.3655
NODDeveloping tillers at six leaf stage, 3rd internode0.1681340.1672290.7917160.647894
CAR5Developing grain, bracts removed (5 DPA)1.333332.112332.087731.33742
CAR15Developing grain, bracts removed (15 DPA)0.578281.596221.124431.72382



CDS Structure of MLOC_18498






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18498.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18498.1CUST_11574_PI427708083AvailableAvailablecontig_1580795 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g07500.1 -1 3e-12 68 34/37 (92%) 13111.m00784 protein DSHCT domain containing protein, expressed
TAIR PP10 AT2G06990.1 -1 8e-11 63 32/37 (86%) | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995