MLOC_18470 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4527420.6557030.6799560.687305
LEAShoots from the seedlings (10 cm shoot stage)23.480240.753553.082236.1193
INF1Young developing inflorescences (5mm)1.972811.681430.9329781.46732
INF2Developing inflorescences (1-1.5 cm)1.548391.056471.168991.52189
ROORoots from the seedlings (10 cm shoot stage)0.05795430.3074440.545560.42289
NODDeveloping tillers at six leaf stage, 3rd internode8.8871511.087118.321741.3156
CAR5Developing grain, bracts removed (5 DPA)1.381631.262341.62731.58487
CAR15Developing grain, bracts removed (15 DPA)0.1331140.3270450.2089910.629511



CDS Structure of MLOC_18470






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18470.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18470.2CUST_9690_PI427708080AvailableAvailablecontig_1580692 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49350.1 -2 0.0 961 492/609 (81%) 13104.m05037 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT5G13770.1 -2 4e-145 449 233/527 (44%) Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:4445461-4447290 FORWARD LENGTH=609