MLOC_18468 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2439540.127840.05605510.142548
LEAShoots from the seedlings (10 cm shoot stage)3.602930.314672.486271.74967
INF1Young developing inflorescences (5mm)0.1662970.03868550.0410920.0874469
INF2Developing inflorescences (1-1.5 cm)0.10515900.04244940.0798471
ROORoots from the seedlings (10 cm shoot stage)58.355327.24849.064136.9344
NODDeveloping tillers at six leaf stage, 3rd internode00.0539140.06834910.166836
CAR5Developing grain, bracts removed (5 DPA)0.1323170.2499530.1687450.231233
CAR15Developing grain, bracts removed (15 DPA)0.063997100.04588110.183609



CDS Structure of MLOC_18468






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18468.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18468.1CUST_9689_PI427708080AvailableAvailablecontig_158069 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g01270.1 +1 4e-136 396 183/228 (80%) 13103.m00042 protein expansin precursor, putative, expressed
TAIR PP10 AT1G65680.1 +1 4e-68 219 112/222 (50%) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273