MLOC_18425 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.08819.381677.8865311.0916
LEAShoots from the seedlings (10 cm shoot stage)13.56210.891614.533812.288
INF1Young developing inflorescences (5mm)15.342417.153817.013115.8968
INF2Developing inflorescences (1-1.5 cm)18.457514.736313.421719.1346
ROORoots from the seedlings (10 cm shoot stage)8.02867.261398.7368810.5331
NODDeveloping tillers at six leaf stage, 3rd internode6.4923111.496111.012440.0205
CAR5Developing grain, bracts removed (5 DPA)7.988858.320028.504029.36053
CAR15Developing grain, bracts removed (15 DPA)1.911862.064331.887735.28039



CDS Structure of MLOC_18425






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18425.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368202NoneNoneNoneNone
MLOC_18425.1CUST_1779_PI427708080AvailableAvailablecontig_158051 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08260.1 +2 4e-115 338 167/176 (95%) 13102.m00952 protein HD domain containing protein 2, putative, expressed
TAIR PP10 AT2G23820.2 +2 8e-92 279 132/176 (75%) Metal-dependent phosphohydrolase | chr2:10140595-10142672 FORWARD LENGTH=257