MLOC_18367 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.695931.701551.418891.58775
LEAShoots from the seedlings (10 cm shoot stage)2.487531.638071.570091.3997
INF1Young developing inflorescences (5mm)1.646641.664173.038581.29359
INF2Developing inflorescences (1-1.5 cm)1.625881.586492.222841.52226
ROORoots from the seedlings (10 cm shoot stage)2.031861.690831.681631.67665
NODDeveloping tillers at six leaf stage, 3rd internode3.287913.041572.589358.00752
CAR5Developing grain, bracts removed (5 DPA)1.970872.198130.9582031.38291
CAR15Developing grain, bracts removed (15 DPA)0.385090.505590.1615350.686199



CDS Structure of MLOC_18367






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18367.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18367.4CUST_11570_PI427708083AvailableAvailablecontig_1580288 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g36630.1 +1 1e-21 94 44/56 (79%) 13103.m04000 protein expressed protein
TAIR PP10 AT4G01897.1 +1 2e-15 74 32/52 (62%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). | chr4:820487-821466 REVERSE LENGTH=122