MLOC_18354 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.576255.117925.033965.39341
LEAShoots from the seedlings (10 cm shoot stage)40.550767.254474.58849.4176
INF1Young developing inflorescences (5mm)2.939142.854462.565882.62394
INF2Developing inflorescences (1-1.5 cm)1.69972.078492.371982.42146
ROORoots from the seedlings (10 cm shoot stage)0.2139630.5603271.223120.714076
NODDeveloping tillers at six leaf stage, 3rd internode10.845118.173628.292656.0757
CAR5Developing grain, bracts removed (5 DPA)7.232269.789738.779769.27674
CAR15Developing grain, bracts removed (15 DPA)0.8017991.206250.7028362.54029



CDS Structure of MLOC_18354






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18354.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357342NoneNoneNoneNone
MLOC_18354.1CUST_1773_PI427708080AvailableAvailablecontig_158024 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g26810.1 +3 5e-149 431 210/270 (78%) 13109.m02593 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT1G19150.1 +3 9e-116 345 166/217 (76%) | Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting complex gene 6 | chr1:6612806-6613799 FORWARD LENGTH=270