- Predicted Gene MLOC_18354
MLOC_18354 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 5.57625 | 5.11792 | 5.03396 | 5.39341 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 40.5507 | 67.2544 | 74.588 | 49.4176 |
INF1 | Young developing inflorescences (5mm) | 2.93914 | 2.85446 | 2.56588 | 2.62394 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.6997 | 2.07849 | 2.37198 | 2.42146 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.213963 | 0.560327 | 1.22312 | 0.714076 |
NOD | Developing tillers at six leaf stage, 3rd internode | 10.8451 | 18.1736 | 28.2926 | 56.0757 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.23226 | 9.78973 | 8.77976 | 9.27674 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.801799 | 1.20625 | 0.702836 | 2.54029 |
CDS Structure of MLOC_18354
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_18354.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g26810.1 |
+3 |
5e-149 |
431 |
210/270 (78%) |
13109.m02593 protein chlorophyll A-B binding protein, putative, expressed |
TAIR PP10 |
AT1G19150.1 |
+3 |
9e-116 |
345 |
166/217 (76%) |
| Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting complex gene 6 | chr1:6612806-6613799 FORWARD LENGTH=270 |