MLOC_18353 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.804676.650257.031957.53381
LEAShoots from the seedlings (10 cm shoot stage)7.117193.69596.111664.86265
INF1Young developing inflorescences (5mm)4.577575.175235.707464.49907
INF2Developing inflorescences (1-1.5 cm)4.716215.646236.164636.0282
ROORoots from the seedlings (10 cm shoot stage)7.630488.450555.644219.82815
NODDeveloping tillers at six leaf stage, 3rd internode17.486219.23529.1762954.4224
CAR5Developing grain, bracts removed (5 DPA)6.908187.619567.040967.1911
CAR15Developing grain, bracts removed (15 DPA)2.291551.773451.928224.94827



CDS Structure of MLOC_18353






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18353.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373954NoneNoneNoneNone
MLOC_18353.1CUST_1772_PI427708080AvailableAvailablecontig_158024 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g26800.1 +2 0.0 838 433/497 (87%) 13109.m02592 protein polygalacturonase, putative, expressed
TAIR PP10 AT1G19170.1 +2 0.0 638 301/421 (71%) Pectin lyase-like superfamily protein | chr1:6616777-6618875 FORWARD LENGTH=506