MLOC_18349 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.69895.798447.46787.44685
LEAShoots from the seedlings (10 cm shoot stage)26.005928.572648.454632.0776
INF1Young developing inflorescences (5mm)9.823918.956588.518687.90581
INF2Developing inflorescences (1-1.5 cm)10.8179.837918.3781311.1004
ROORoots from the seedlings (10 cm shoot stage)2.529942.209293.160783.18796
NODDeveloping tillers at six leaf stage, 3rd internode21.741324.265421.601879.5802
CAR5Developing grain, bracts removed (5 DPA)6.691416.214527.471366.8698
CAR15Developing grain, bracts removed (15 DPA)0.8985820.478870.8253331.7387



CDS Structure of MLOC_18349






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18349.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18349.1CUST_2639_PI427708083AvailableAvailablecontig_1580228 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29370.2 -2 1e-40 145 70/75 (93%) 13108.m03034 protein peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
TAIR PP10 AT3G01480.1 -2 4e-38 137 66/76 (87%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437