MLOC_18346 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.43034.290953.894294.51396
LEAShoots from the seedlings (10 cm shoot stage)2.944031.521121.727061.67046
INF1Young developing inflorescences (5mm)7.617138.443498.741557.48105
INF2Developing inflorescences (1-1.5 cm)9.79929.461919.1714910.7037
ROORoots from the seedlings (10 cm shoot stage)4.194873.507892.825883.9603
NODDeveloping tillers at six leaf stage, 3rd internode1.917922.437491.919466.9304
CAR5Developing grain, bracts removed (5 DPA)7.007216.441147.515726.97137
CAR15Developing grain, bracts removed (15 DPA)2.116611.753981.885654.70756



CDS Structure of MLOC_18346






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18346.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375189NoneNoneNoneNone
MLOC_18346.1CUST_1771_PI427708080AvailableAvailablecontig_158022 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g59070.1 -1 0.0 576 331/473 (70%) 13101.m06274 protein expressed protein
TAIR PP10 AT4G12700.1 -1 1e-105 331 181/430 (42%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04280.1); Has 136 Blast hits to 136 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr4:7482643-7484328 REVERSE LENGTH=561