MLOC_18340 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07359070.09329710.09265660.101376
LEAShoots from the seedlings (10 cm shoot stage)00.1173940.3585960.2506
INF1Young developing inflorescences (5mm)0.08655590.1237960.03732130.0900852
INF2Developing inflorescences (1-1.5 cm)0.2479460.2057490.1829280.257717
ROORoots from the seedlings (10 cm shoot stage)0.3830280.034026900.129384
NODDeveloping tillers at six leaf stage, 3rd internode0.05330240.04048470.02978040.133691
CAR5Developing grain, bracts removed (5 DPA)1.390781.734772.000931.75693
CAR15Developing grain, bracts removed (15 DPA)0.9931460.8456260.5199112.07827



CDS Structure of MLOC_18340






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18340.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18340.1CUST_17580_PI427708080AvailableAvailablecontig_158019 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g48090.1 +2 0.0 531 287/385 (75%) 13103.m05189 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT1G71840.1 +2 2e-124 373 198/392 (51%) transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407