- Predicted Gene MLOC_18340
MLOC_18340 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.0735907 | 0.0932971 | 0.0926566 | 0.101376 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0.117394 | 0.358596 | 0.2506 |
INF1 | Young developing inflorescences (5mm) | 0.0865559 | 0.123796 | 0.0373213 | 0.0900852 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.247946 | 0.205749 | 0.182928 | 0.257717 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.383028 | 0.0340269 | 0 | 0.129384 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0533024 | 0.0404847 | 0.0297804 | 0.133691 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.39078 | 1.73477 | 2.00093 | 1.75693 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.993146 | 0.845626 | 0.519911 | 2.07827 |
CDS Structure of MLOC_18340
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_18340.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g48090.1 |
+2 |
0.0 |
531 |
287/385 (75%) |
13103.m05189 protein WD domain, G-beta repeat domain containing protein, expressed |
TAIR PP10 |
AT1G71840.1 |
+2 |
2e-124 |
373 |
198/392 (51%) |
transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407 |