MLOC_18337 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.097916.889518.566318.1609
LEAShoots from the seedlings (10 cm shoot stage)12.13669.017219.106538.41259
INF1Young developing inflorescences (5mm)2.607942.978512.973182.47482
INF2Developing inflorescences (1-1.5 cm)3.78174.981735.909345.3412
ROORoots from the seedlings (10 cm shoot stage)26.725823.587619.421426.5695
NODDeveloping tillers at six leaf stage, 3rd internode14.448321.955921.756868.8087
CAR5Developing grain, bracts removed (5 DPA)19.347417.779519.578718.6406
CAR15Developing grain, bracts removed (15 DPA)3.161153.461543.100887.7653



CDS Structure of MLOC_18337






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18337.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371440NoneNoneNoneNone
MLOC_18337.2CUST_1770_PI427708080AvailableAvailablecontig_1580183 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g12320.1 -1 4e-155 454 218/345 (63%) 13101.m01328 protein GDSL-like lipase/acylhydrolase, putative, expressed
TAIR PP10 AT5G45910.1 -1 3e-86 276 150/338 (44%) GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18620420-18622264 REVERSE LENGTH=372