MLOC_18267 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.652575.546556.504116.96159
LEAShoots from the seedlings (10 cm shoot stage)2.96522.049952.552762.53537
INF1Young developing inflorescences (5mm)13.758117.520817.410816.9734
INF2Developing inflorescences (1-1.5 cm)22.943920.316721.644827.5238
ROORoots from the seedlings (10 cm shoot stage)3.663387.660965.2924910.4646
NODDeveloping tillers at six leaf stage, 3rd internode0.1886770.4777371.171742.20314
CAR5Developing grain, bracts removed (5 DPA)8.6770511.46458.5469111.8207
CAR15Developing grain, bracts removed (15 DPA)2.437321.624862.539176.04667



CDS Structure of MLOC_18267






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18267.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18267.2CUST_9661_PI427708080AvailableAvailablecontig_1579922 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40680.1 +1 1e-31 115 55/88 (63%) 13102.m04535 protein mis12 protein, expressed
TAIR PP10 AT5G35520.1 +1 5e-11 58 29/89 (33%) | Symbols: MIS12, ATMIS12 | minichromosome instability 12 (mis12)-like | chr5:13701396-13702925 FORWARD LENGTH=238