MLOC_18258 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.126713.492414.382517.1056
LEAShoots from the seedlings (10 cm shoot stage)12.47349.8768211.963112.588
INF1Young developing inflorescences (5mm)37.726735.954337.550936.5347
INF2Developing inflorescences (1-1.5 cm)41.044234.230934.238847.407
ROORoots from the seedlings (10 cm shoot stage)3.887449.029997.5177914.2491
NODDeveloping tillers at six leaf stage, 3rd internode1.022142.370693.8617712.022
CAR5Developing grain, bracts removed (5 DPA)21.193221.471224.671127.2502
CAR15Developing grain, bracts removed (15 DPA)10.577810.08798.0927626.2497



CDS Structure of MLOC_18258






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18258.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375104NoneNoneNoneNone
MLOC_18258.1CUST_142_PI427708083AvailableAvailablecontig_1579885 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g21530.1 -3 4e-120 379 197/255 (77%) 13103.m02580 protein AARP2CN domain containing protein, expressed
TAIR PP10 AT1G06720.1 -3 4e-78 262 147/253 (58%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2060615-2067281 REVERSE LENGTH=1147