MLOC_18233 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains407.059381.67401.638371.883
LEAShoots from the seedlings (10 cm shoot stage)520.975552.387376.926398.949
INF1Young developing inflorescences (5mm)345.895395.64353.385298.211
INF2Developing inflorescences (1-1.5 cm)224.881253.884242.962249.855
ROORoots from the seedlings (10 cm shoot stage)1080.45875.446946.7451039.22
NODDeveloping tillers at six leaf stage, 3rd internode264.421270.499309.58926.434
CAR5Developing grain, bracts removed (5 DPA)917.499963.227915.008868.211
CAR15Developing grain, bracts removed (15 DPA)728.182701.677652.2431523.98



CDS Structure of MLOC_18233






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18233.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250578.1NoneNoneNoneNone
MLOC_18233.1CUST_1760_PI427708080AvailableAvailablecontig_1579793 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g03290.1 -2 0.0 600 313/337 (93%) 13108.m00277 protein glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT1G13440.1 -2 0.0 567 295/333 (89%) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=338