MLOC_18223 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.660563.966993.33693.43665
LEAShoots from the seedlings (10 cm shoot stage)4.327683.353224.102682.80759
INF1Young developing inflorescences (5mm)4.328245.469324.279533.44544
INF2Developing inflorescences (1-1.5 cm)5.38374.644124.47844.8472
ROORoots from the seedlings (10 cm shoot stage)5.422233.828974.269734.02218
NODDeveloping tillers at six leaf stage, 3rd internode2.661623.064055.703099.2379
CAR5Developing grain, bracts removed (5 DPA)4.696644.65344.713634.11232
CAR15Developing grain, bracts removed (15 DPA)1.481091.284421.397152.92088



CDS Structure of MLOC_18223






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18223.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370161NoneNoneNoneNone
MLOC_18223.1CUST_1759_PI427708080AvailableAvailablecontig_157977 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02690.1 +2 3e-65 222 171/235 (73%) 13105.m00241 protein sensitivity to red light reduced protein 1, putative, expressed
TAIR PP10 AT5G59560.2 +2 1e-19 91 52/130 (40%) | Symbols: SRR1 | sensitivity to red light reduced protein (SRR1) | chr5:24000747-24001574 REVERSE LENGTH=275