MLOC_18158 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.372620.16521.844519.0921
LEAShoots from the seedlings (10 cm shoot stage)17.083716.994517.686312.0893
INF1Young developing inflorescences (5mm)13.689214.085119.741310.1394
INF2Developing inflorescences (1-1.5 cm)14.45217.82517.11914.0769
ROORoots from the seedlings (10 cm shoot stage)20.699419.456219.431618.4054
NODDeveloping tillers at six leaf stage, 3rd internode18.004717.011922.114345.7068
CAR5Developing grain, bracts removed (5 DPA)13.667215.602316.296211.0374
CAR15Developing grain, bracts removed (15 DPA)5.534474.26044.937818.86812



CDS Structure of MLOC_18158






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18158.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18158.1NoneAvailableAvailablecontig_1579479 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g34540.1 -3 5e-15 76 35/37 (95%) 13110.m03075 protein tetratricopeptide repeat protein 1, putative, expressed
TAIR PP10 AT4G30480.2 -3 7e-14 72 32/36 (89%) | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:14897500-14898937 FORWARD LENGTH=277