MLOC_18156 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.270281.943651.927092.25477
LEAShoots from the seedlings (10 cm shoot stage)2.463940.7707641.506491.46968
INF1Young developing inflorescences (5mm)5.883417.561747.606326.46864
INF2Developing inflorescences (1-1.5 cm)8.9356710.66219.5314711.0962
ROORoots from the seedlings (10 cm shoot stage)2.303172.125542.008032.91751
NODDeveloping tillers at six leaf stage, 3rd internode0.7016691.181080.5728943.48904
CAR5Developing grain, bracts removed (5 DPA)7.347527.300828.372357.79281
CAR15Developing grain, bracts removed (15 DPA)4.649054.567245.4203412.0792



CDS Structure of MLOC_18156






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18156.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18156.1CUST_2614_PI427708083AvailableAvailablecontig_1579478 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g15820.1 +1 3e-55 191 101/136 (74%) 13106.m01745 protein NHL repeat-containing protein, putative, expressed
TAIR PP10 AT1G70280.1 +1 2e-14 74 41/112 (37%) NHL domain-containing protein | chr1:26466086-26468116 REVERSE LENGTH=447