MLOC_18134 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains94.108285.250580.921378.5293
LEAShoots from the seedlings (10 cm shoot stage)63.41265.296472.062251.0732
INF1Young developing inflorescences (5mm)91.7048102.86393.528474.8774
INF2Developing inflorescences (1-1.5 cm)92.7609102.154106.788101.874
ROORoots from the seedlings (10 cm shoot stage)162.942115.047167.089134.443
NODDeveloping tillers at six leaf stage, 3rd internode54.258829.944733.651583.7535
CAR5Developing grain, bracts removed (5 DPA)62.189674.204556.744558.3852
CAR15Developing grain, bracts removed (15 DPA)26.974626.973724.789356.4021



CDS Structure of MLOC_18134






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18134.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251558.1NoneNoneNoneNone
MLOC_18134.1CUST_17952_PI427708080AvailableAvailablecontig_1579361 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g42910.1 -3 1e-28 106 53/70 (76%) 13104.m04247 protein expressed protein
TAIR PP10 AT5G01350.1 -3 5e-17 74 37/61 (61%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:145865-146911 REVERSE LENGTH=72