MLOC_18085 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.309926000.295552
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.53554800.2078310.423646
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.3136790.8846682.48849
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_18085






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18085.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18085.1CUST_2607_PI427708083AvailableAvailablecontig_1579164 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g37710.1 +3 7e-37 127 56/68 (82%) 13104.m03608 protein serine hydrolase domain containing protein, expressed
TAIR PP10 AT4G24380.2 +3 2e-30 107 50/75 (67%) CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171