MLOC_18083 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2215290.3712790.4639390.327079
LEAShoots from the seedlings (10 cm shoot stage)0.869370.5774590.2442790.514292
INF1Young developing inflorescences (5mm)4.137595.833556.141054.68637
INF2Developing inflorescences (1-1.5 cm)13.492211.916111.309813.9033
ROORoots from the seedlings (10 cm shoot stage)00.607560.407421.03974
NODDeveloping tillers at six leaf stage, 3rd internode0.1750390.2532820.2664810.908377
CAR5Developing grain, bracts removed (5 DPA)9.025278.497118.250578.67363
CAR15Developing grain, bracts removed (15 DPA)0.6333590.4551510.7083071.35537



CDS Structure of MLOC_18083






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18083.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18083.3CUST_2606_PI427708083AvailableAvailablecontig_1579163 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g28060.3 +2 2e-51 183 122/296 (41%) 13106.m10544 protein ATP-binding region, ATPase-like domain containing protein, expressed
TAIR PP10 AT1G19100.1 +2 2e-20 94 44/73 (60%) Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr1:6595560-6601159 FORWARD LENGTH=663